Open data visualization and sharing for genomic epidemiology

In partnership with

Public Health EnglandCenters for Disease Control and PreventionEuropean Centre for Disease Prevention and ControlMicrobiology SocietyNorwegian Institute of Public Health

Tracing the spread of carbapenem-resistant Klebsiella pneumoniae

David S et al. 2019.

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature Microbiology 2058-5276. (doi:10.1038/s41564-019-0492-8)

https://www.nature.com/articles/s41564-019-0492-8

Streptococcus pneumoniae PMEN2

Croucher NJ et al. 2014.

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone. BMC Biology 12:49

http://www.ncbi.nlm.nih.gov/pubmed/24957517

Y-chromosome Human Phylogeny

Hallast P. et al. 2015.

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades. Mol Biol Evol 32(3):661

http://www.ncbi.nlm.nih.gov/pubmed/25468874

Salmonella Typhi

Wong V. et al. 2015.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intra-continental transmission events. Nature Genetics 47(6):632

http://www.ncbi.nlm.nih.gov/pubmed/25961941